I combined the htaccess files (putting the blog rewrite rule to the bottom of the file) now having just one htacess in the root directory and unfortunately it did not work. When I tried it, all the links on the blog would not work, they were all "page not found" so I reverted it back to what I originally had... Here is what the combined htaccess file looked like:
RewriteEngine On
RewriteCond %{THE_REQUEST} ^[A-Z]{3,9}\ /index.htm\ HTTP/
RewriteRule ^index.htm$ http://www.example.com/ [R=301,L]
RewriteCond %{HTTP_HOST} ^example.com$
RewriteRule ^(.*)$ http://www.example.com/$1 [R=301,L]
<ifmodule mod_rewrite.c="">RewriteEngine On
RewriteBase /blog/
RewriteCond %{THE_REQUEST} ^./index.php/. [NC]
RewriteRule ^index.php/(.*)$ http://www.example.com/blog/$1 [R=301,L]
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule . /blog/index.php [L]</ifmodule>
Thanks again for any insight!