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Is it bad to have /index.php at the end of a uri?
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Is it bad for SEO if traffic is directed to "http://www.example.com/someuri/index.php" instead of "http://www.example.com/someuri/" and would it be works setting up a redirect rule at htaccess level?
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Yes bad for both. You now have the name of a file acting as the name of a folder.
As mentioned above - kill the use of index.php as your index "file" - just end in a slash.
I know php treats these as routes/queries that then produce a page, but it can get things all messed up real quick.
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Oops thanks for all you answers, but what i should have said is: Is having "/index.php/" half way through the URI like so
"http://www.example.com/someuri/index.php/more_uri/"
bad for SEO/UX?
To clarify if one searched on Google for more_uri and everything else was equal would the index.php in the middle of that URI be damaging to the ranking?
Sorry about that

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Whilst I don't think the index.php will have a direct impact on the SEO of your website it could easily have an indirect impact.
As CleverPhD rightly points out it is a pain in the *** to remember and type that sort of URL.
Not only for yourself but also for other websites and customers.
The impact this has is hard to quantify... If I'm a site in your niche and want to link to you does this put me off? What if I link to the wrong site?
Beyond that ending in index isn't as nice a user experience as just ending at the page name and ultimately its my belief that if you do whats best for the user you'll get good results from google.
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Correct - the duplicate issue is what will hurt you. Whatever you go with, make sure the other variants 301 redirect to the "true" page.
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OK thanks, so index.php won't effect the SEO results. But not redirecting it, as both /index.php and / work correctly and go to the same php file, will result in the same content being registered twice by Google I'm guessing?
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It is not "bad", although typical style would be that you can drop it as the extra characters are not needed and nobody likes extra typing - just ask Mr. Twitter. He used brevity to become a billionaire! Hmm .. I wish we could get Moz points for alliteration.
What is key is that you are consistent in your use of it. If you want to use /index.php then go for it. Just make sure every time you link to that URL in your menus or in articles when you Twiddle it of Farcebook it, you include the /index.php at the end as you do not want to have duplicate URLs for the same page. I would also setup 301 redirects so that the / only version redirects to the index.php version.
All of that said, you are going to find that after the 104th time of Twiddling that URL, you will say, "Gee, it sure is a pain to type all those extra characters." You will also find that when people are going to share your URLs they may have a tendency to drop the index.php as again, it is extra work. If you have the redirect in place, you will be ok, but I say, why have you and everyone else do all that extra work to start with. Just start with the URL ending in the slash and stay with that. Have all other versions of the index page (index.php, index.htm or even a non slashed version, etc) 301 redirect to the URL that ends in a /.
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