Hi Alick,
I should explain that we're a landing page platform so the /clkn/ tracking links that are getting indexed are getting indexed on our customer domains, not ours. Therefore we'd have no access to Google Search Console to make any tweaks.
i.e. http://customerdomain.com/clkn/http/destination-url.com
Secondly, this URL ^ does not contain any parameters, so the fix you mentioned above doesn't apply.
Any other ideas?